Puntervoll group
(Puntervoll also has an experimental research group at the Department of Molecular Biology - see Puntervoll and ETECvac)
The main activity of the group is the project "eSysbio - an e-science environment for systems biology". The aim of the eSysbio project is to build a collaborative virtual workspace that will facilitate the interdisciplinary exploitation of data, tools and computational resources relevant for integrative and systems biology research.
The eSysbio project is funded through the eVita programme, the Research Council of Norway.
The project is a collaboration between researchers at Parallab and the Computational Biology Unit (CBU) within Bergen Center for Computational Science (BCCS).
Recent publications
- Jørgensen KM, Hjelle SM, Oye OK, Puntervoll P, Reikvam H, Skavland J, Anderssen E, Bruserud O, Gjertsen BT. (2010) Untangling the intracellular signalling network in cancer - a strategy for data integration in acute myeloid leukaemia. J Proteomics. Nov 11. [Epub ahead of print]
- Kalas M, Puntervoll P, Joseph A, Bartaseviciūte E, Töpfer A, Venkataraman P, Pettifer S, Bryne JC, Ison J, Blanchet C, Rapacki K, Jonassen I. (2010) BioXSD: the common data-exchange format for everyday bioinformatics web services. Bioinformatics. 2010 Sep 15;26(18):i540-6. BioXSD web page.
- Subramanian, S. Puntervoll, P. Sztromwasser, P. (2010) Optimizing the Data-Traffic of Centrally Coordinated Scientific Workflow Systems. Web Services (ICWS), 2010 IEEE International Conference on, Issue Date: 5-10 July 2010: 685-688.
- Berg K, Puntervoll P, Valdersnes S, Goksøyr A. (2010) Responses in the brain proteome of Atlantic cod (Gadus morhua) exposed to methylmercury. Aquat Toxicol. 2010 Jul 13. [Epub ahead of print]
- Ognedal Berge E, Knappskog S, Geisler S, Staalsen V, Pacal M, Borresen-Dale AL, Puntervoll P, Lillehaug JR, Lonning PE. (2010) Identification and characterization of retinoblastoma gene mutations disturbing apoptosis in human breast cancers. Mol Cancer. 9(1):173.
- Taxt A, Aasland R, Sommerfelt H, Nataro J, Puntervoll P. (2010) Heat-stable enterotoxin of enterotoxigenic Escherichia coli as a vaccine target. Infect Immun. 78(5):1824-31.
- Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ. (2010) ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Res. 38(Database issue):D167-80.
- Hansen TE, Puntervoll P, Seternes OM, Jørgensen JB. (2008) Atlantic salmon possess three mitogen activated protein kinase kinase 6 paralogs responding differently to stress. FEBS J. 275(19):4887-902.
- Pocanschi CL, Apell HJ, Puntervoll P, Høgh B, Jensen HB, Welte W, Kleinschmidt JH. (2006) The major outer membrane protein of Fusobacterium nucleatum (FomA) folds and inserts into lipid bilayers via parallel folding pathways. J Mol Biol. 355(3):548-61.
- Karlsen OA, Kindingstad L, Angelskår SM, Bruseth LJ, Straume D, Puntervoll P, Fjellbirkeland A, Lillehaug JR, Jensen HB. (2005) Identification of a copper-repressible C-type heme protein of Methylococcus capsulatus (Bath). A member of a novel group of the bacterial di-heme cytochrome c peroxidase family of proteins. FEBS J. 272(24):6324-35.
- Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Küster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ. (2003) ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res. 2003 31(13):3625-30.
